PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0330.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 324aa    MW: 36426.2 Da    PI: 4.8027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.15.2e-4761363128
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWka 85 
                             +G+rFhPtdee+++++Lk+k++g++ ++++ i+e+d++k+ePwdLpk  ++++  +++ +yfF++rd ky++++r nr+tk+gyWk+
  SapurV1A.0003s0330.1.p   6 VGYRFHPTDEEIISYFLKHKMDGSDSSVDDDIPEIDLCKFEPWDLPKyaAMEEpsNDQVLYFFCPRDCKYPNSQRVNRTTKAGYWKS 92 
                             7***************************999***************63433334355567*************************** PP

                     NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tg+d++++++ +++++g+kktLvf++gr p+g kt+W++heyr 
  SapurV1A.0003s0330.1.p  93 TGRDRKIKARrTKKEIGTKKTLVFHEGRVPDGIKTNWIIHEYRS 136
                             ********9867788***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100547.9364154IPR003441NAC domain
SuperFamilySSF1019412.22E-475153IPR003441NAC domain
PfamPF023658.6E-256135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSDRRVGYRF HPTDEEIISY FLKHKMDGSD SSVDDDIPEI DLCKFEPWDL PKYAAMEEPS  60
NDQVLYFFCP RDCKYPNSQR VNRTTKAGYW KSTGRDRKIK ARRTKKEIGT KKTLVFHEGR  120
VPDGIKTNWI IHEYRSQTIL PHQRAFTVCK LKEKGDGNTD TQACDEGETS NKRPTNLGNP  180
VESPIQQVDQ ERQVESVVTG NRLVFRCPPA MQQQVHEEQG LSFENTPFTN GTGYGYNEFD  240
TDEEEVDPVK FADSFLGEPP DDSSGNTFSI SQPESDYEET PNTLLSNCNP PVIKGYLQSG  300
TTAQCSMGTS NLSAGYAGAD ACH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-34715420165NAC domain-containing protein 19
4dul_A1e-34715420165NAC domain-containing protein 19
1ut7_B1e-34715420165NO APICAL MERISTEM PROTEIN
1ut7_A1e-34715420165NO APICAL MERISTEM PROTEIN
1ut4_B1e-34715420165NO APICAL MERISTEM PROTEIN
1ut4_A1e-34715420165NO APICAL MERISTEM PROTEIN
3swp_D1e-34715423168NAC domain-containing protein 19
3swp_C1e-34715423168NAC domain-containing protein 19
3swp_B1e-34715423168NAC domain-containing protein 19
3swp_A1e-34715423168NAC domain-containing protein 19
3swm_D1e-34715423168NAC domain-containing protein 19
3swm_C1e-34715423168NAC domain-containing protein 19
3swm_B1e-34715423168NAC domain-containing protein 19
3swm_A1e-34715423168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572333.12e-83PREDICTED: NAC domain-containing protein 101
SwissprotB5X5704e-48NAC14_ARATH; NAC domain-containing protein 14
TrEMBLB9RMW52e-82B9RMW5_RICCO; Transcription factor, putative
TrEMBLR4N5S45e-83R4N5S4_JATCU; NAC transcription factor 071
STRINGPOPTR_0014s10330.18e-58(Populus trichocarpa)
STRINGPOPTR_0014s10350.14e-58(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-49NAC 014